منابع مشابه
NCBIminer: sequences harvest from Genbank
Here we developed a new program referred to as NCBIminer (NCBI data miner, available at: http://code.google.com/p/ ncbiminer/) which is written as MATLAB scripts and compiled to a standalone application. NCBIminer is a userfriendly application for downloading sequences efficiently and automatically from GenBank with high flexibility and high accuracy. NCBIminer uses an iterated BLAST (basic l...
متن کاملGenBank
GenBank (R) is a comprehensive sequence database that contains publicly available DNA sequences for more than 119 000 different organisms, obtained primarily through the submission of sequence data from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the BankIt (web) or Sequin programs and accession numbers are assigned by GenB...
متن کاملLearning to Extract Relations from MEDLINE
Information in text form remains a greatly underutilized resource in biomedical applications. We have begun a research effort aimed at learning routines for automatically mapping information from biomedical text sources, such as MEDLINE, into structured representations, such as knowledge bases. We describe our application, two learning methods that we have applied to this task, and our initial ...
متن کاملGenBank: update
GenBank is a comprehensive database that contains publicly available DNA sequences for more than 140 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the BankIt (web) or Sequin program and accession numbers are assigned by GenBank staff upon receipt. Daily data exc...
متن کاملGenBank Dennis
The GenBank (Registered Trademark symbol) sequence database incorporates DNA sequences from all available public sources, primarily through the direct submission of sequence data from individual laboratories and from large-scale sequencing projects. Most submitters use the BankIt (Web) or Sequin programs to format and send sequence data. Data exchange with the EMBL Data Library and the DNA Data...
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 1988
ISSN: 0305-1048,1362-4962
DOI: 10.1093/nar/16.5.1667